I'm thinking when the smoke clears at the Colony, the Mallers will be routed and Scratch will have to make a tactical retreat. With the Mallers gone and Gatekeeper being a shadow of his former self this is going to create a major power vacuum. Since CJ had the forethought to stockpile the weapons and plan the raid, I think the remaining Colonists will see her as a natural leader and she'll be reluctantly roped into bringing order from chaos.
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